Installation

1. Install copepodTCR.

   With pip:

   pip install copepodTCR
   

   Or with conda:

   conda install -c vasilisa.kovaleva copepodTCR
   

2. Instal dependencies for 3D modeling of masks. You can skip this step, if you don’t plan to use function from 3D model section.

   After installing copepodTCR either way, install manifold3d:

   pip install manifold3d
   

   Alternative to manifold3d is Blender, it can be installed from Blender official website (version 4.5 and higher).

   You can use cpp.pick_engine() to check with engines are available in you environment.

Requirements

Except for manifold3d, required packages should be installed simulataneously with the copepodTCR packages.

But if they were not, here is the list of requirements:

• pandas>=1.5.3

  pip install "pandas>=1.5.3"
  

• numpy>=1.23.5

  pip install "numpy>=1.23.5"
  

• trimesh>=3.23.5

  pip install "trimesh>=3.23.5"
  

• PyMC>=5.9.2

  pip install "pymc>=5.9.2"
  

• Arviz>=0.16.1

  pip install "arviz>=0.16.1"
  

• matplotlib>=3.10.5

  pip install "matplotlib>=3.10.5"
  

• seaborn>=0.13.2

  pip install "seaborn>=0.13.2"
  

• plotly>=6.2.0

  pip install "plotly>=6.2.0"